Hi
I downloaded the drosophila RepeatMasker from UCSC GB as a
text file which is in fasta format and looks like this:
dm3_rmsk_NINJA_I range=chr4:2-434 5'pad=0 3'pad=0 strand=+ repeatMasking=none
AATTCGCGTCCGCTTA......
dm3_rmsk_NINJA_LTR range=chr4:435-611 5'pad=0 3'pad=0 strand=+
repeatMasking=none
TGTCGCGGATC....
dm3_rmsk_Baggins1 range=chr4:638-1723 5'pad=0 3'pad=0 strand=-
repeatMasking=none
ATACGATGG......
I made the input dictionary and I would like to make the
RepeatMasker sequences as the target. When I used
read.DNAStringSet it recognized only the first sequence
of the fasts file. Ho do I merge all of the sequences in
and make them as a target.
Thank you for your help
Regards,
Joseph
Joseph M. Dhahbi, PhD
Childrens Hospital Oakland Research Institute
5700 Martin Luther King Jr. Way
Oakland, CA 94609
USA
Ph.(510)428-3885 EXT.5743
Cell.(702)335-0795
Fax (510)450-7910
[EMAIL PROTECTED]
The email message (and any attachments) is for the sole...{{dropped:3}}
_______________________________________________
Bioc-sig-sequencing mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
