Dear List,
Does anybody have ever try to analyse some SOLID data using Biostrings
and ShortRead ?? or anything else !
The ShortRead package was developped to manipulate short reads from
Solexa, 454, Helicos or SOLiD (cf vignette), but in practice, it seems
to be more complicated ... the input are different from Solexa of
course, and we have to deal with the color code ...
Does anybody have some experience with this data ? especially for the
adaptor removal ?
Thanks,
Nicolas
--
Nicolas Servant
Equipe Bioinformatique
Institut Curie
26, rue d'Ulm - 75248 Paris Cedex 05 - FRANCE
Email: [email protected]
Tel: 01 56 24 69 85
http://bioinfo.curie.fr/
_______________________________________________
Bioc-sig-sequencing mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
