Two questions:
1) Is there a package in R that will allow me to map transcriptional responses (as determined by RNAseq using Solexa and scaffolded to a complete and annotated genome) to Kegg pathways? If so what is it/are they? And if there are several which is the best? 2) This is a question I asked previously but didn't get a satisfactory answer: I was hoping someone might point me in the direction of a good package (in R) for generating heatmaps from my prescaffolded (using Novalign with quantitative and statistical analysis performed using ShortRead; so I already have counts per gene and information on differential expression between the conditions tested) solexa analysis of a transcriptome. I'm aware there may be many but can someone point me in the direction of one that they have used successfully and would be compatible.
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