joseph <[email protected]> writes: > Hi > what do you use for the 'type' argument to analyze Bowtie output with qa()? > the types in ShortRead_1.1.51 are 'SolexaExport', 'MAQMapShort' and 'fastq.
Bowtie qa is not currently supported but I'll add it asap and let you know... Martin > Thanks > Joseph > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M2 B169 Phone: (206) 667-2793 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
