Hello, How do you pool together reads from multiple Solexa runs?
Specificaly: Say that the structure of my hard drive looks like this /experiment01/GERALD_analysis01/(here all 8 lanes) /experiment01/GERALD_analysis02/(here all 8 lanes) /experiment02/GERALD_analysis01/(here all 8 lanes) Now say that my control1 lanes are in experiment01, analysis01, lanes 1 and 2 experiment01, analysis02, lanes 3 and 4 (all four lanes are biologically identical) Now say that my treatment1 is in experiment02, analysis01, lane 5 and 7 Now say that I plan to read all Reads with a filter instance called myFilter. The question: How do I collect all that information into a single GenomeDataList object where I can call its GenomeData objects like this myGenomeDataList$control1 myGenomeDataList$treatment1 ? Please try to answer the specific example because there is no alternative documentation. Thank you, Ivan _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
