Nicolas, Vince,

 

Thanks a lot for your kind help. I have got it and will give it a try.

 

Xiwei

 

________________________________

From: Vincent Carey [mailto:[email protected]] 
Sent: Thursday, April 23, 2009 9:32 AM
To: Nicolas Delhomme
Cc: Wu, Xiwei; [email protected]
Subject: Re: [Bioc-sig-seq] chipseq package





On Thu, Apr 23, 2009 at 12:12 PM, Nicolas Delhomme <[email protected]>
wrote:

Hi Xiwei,

This is from the list archive:

> Laurent is correct. You can find the chipseq package at
>
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/chipseq
>
> Note that this package is currently considered to be experimental and
function interfaces and behavior are subject to change beyond what would
normally be excepted for a released BioC package.


in case it is not completely clear, you would use subversion to retrieve
this -- it does not
seem to be accessible via biocLite

svn co
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/chipseq 

you will be challenged for credentials, and they are on the website;
contact me off line if you cannot find




        
        Cheers,
        
        N.
        
        ---------------------------------------------------------------
        Nicolas Delhomme
        
        High Throughput Functional Genomics Center
        
        European Molecular Biology Laboratory
        
        Tel: +49 6221 387 8426
        Email: [email protected]
        Meyerhofstrasse 1 - Postfach 10.2209
        69102 Heidelberg, Germany
        ---------------------------------------------------------------

        
        
        
        
        On 23 Apr 2009, at 17:03, Wu, Xiwei wrote:

        Dear all,
        
        I was looking at some of the recent workshops related to
chip-seq data analysis. It looks like a package called "chipseq" is
mentioned and used in the workshops. However, I can not find the package
in Bioconductor site. Could someone point me to where to get that
package? Thanks in advance.
        
        Xiwei
        
        
        
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-- 
Vincent Carey, PhD
Biostatistics, Channing Lab
617 525 2265


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