Hi Jake -- Jake Lin wrote: > Hi, > I am looking into running one of the analysis workflow examples of chipseq > described in Bioconductor's workshop and documentation. > It looks like the chipseq package is not avaiable yet; I saw a posting that > said it was possible to svn co ... the source and build it and then tar it > up but the svn repo prompted for username/password.
Visit http://bioconductor.org --> Developer Information and look for the user name and password (readonly and readonly; they aren't meant to be a secret). I'd suggest using the development version of R, then biocLite('ShortRead') to get the latest ShortRead and it's dependencies, then svn co https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/chipseq then R CMD INSTALL --clean chipseq (windows users will need http://www.murdoch-sutherland.com/Rtools/) Martin > Any information concerning when or another way of getting this library would > be very much appreciated. > > Thanks, > Jake @ ISB > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
