"Eyad Almasri" <[email protected]> writes: > Hello > > I want to ask if when qa() will be available for bowtie alignment files?
Hi Eyad -- It's available now (ShortRead 1.2.0, available with the current release of Bioconductor) qa <- qa(dirPath, pattern, type="Bowtie") browseURL(report(qa)) for a bit of speed try library(Rmpi) mpi.spawn.Rslaves(nsl=as.many.as.bowtie.files.or.nodes.in.cluster) before qa (the input and some processing steps can be quite time / memory intensive). Martin > Thanks > > Eyad > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
