Hi,
I'm a PhD student at Aalborg University, and I work daily with these
kinds of data. Most of our data analysis is done with customised perl
scripts, (the method was actually developed by our group). I would be
glad to come with sugestions, and answer some specific questions
/Mads
Jenny Drnevich skrev:
Hi,
Anyone working with Illumina's Digital Gene Expression data? It's
sequencing 17mer NLA3 "tags" pulled from 3' ends of transcripts on
Illumina's GAII. I have the sequence data processed already and read
counts, and now I'm just starting to try to estimate expression
levels. I think I can do it all with tools already available in
Bioconductor; I'm looking for someone who would be interested in
having discussions on the best way to analyze this sort of data. I
thought I'd try here first, and then the BioC mailing list.
Thanks,
Jenny
Jenny Drnevich, Ph.D.
Functional Genomics Bioinformatics Specialist
W.M. Keck Center for Comparative and Functional Genomics
Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign
330 ERML
1201 W. Gregory Dr.
Urbana, IL 61801
USA
ph: 217-244-7355
fax: 217-265-5066
e-mail: [email protected]
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