Lana Schaffer wrote:
Hi,
We have Illumina sequencing data for small RNA with
variable length adapter sequence on the 3' end of the reads.
How do you recommend removing the variable length
adaptor sequences from the reads?
Biostrings::trimLRPatterns would be a good place to start.
Martin
Lana Schaffer
Biostatistics/Informatics
The Scripps Research Institute
DNA Array Core Facility
La Jolla, CA 92037
(858) 784-2263
(858) 784-2994
[email protected]
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--
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold Building M1 B861
Phone: (206) 667-2793
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