Hi all,
In assigning RNA-seq data to exon-models, I'm looking for a proper overlap
function. Both IRanges and genomeIntervals have overlap functions, but as
far as I can see, these don't have options for contained overlaps, example:
|-------Range 1-------]
[----Range 2----]
IRanges, genomeIntervals: TRUE
Wanted: TRUE
|-------Range 1-------]
[----Range 2----]
IRanges, genomeIntervals: TRUE
Wanted: FALSE
Any suggestions are appreciated!
Regards,
Johannes Waage,
Uni. of Copenhagen
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