Dear all,

I've loaded a complete genome into variable "mychr" and created many views of it.
How can I represent all the generated views in a graphical plot?

" mychr" is :
 1860725-letter "DNAString" instance
seq: TGGTACCGGAAGCTATGCGTTAAAAAAGGAATAATG...GCAATTACCGGTAACGAAAAATTTCATGCGCCTTTC

Views generated are :
views:
       start     end width
[1] 2231 11434 9204 [GAGGTATGGAAACCTGATCTAGCC...TTCACCATAGTCGATTATAACAC] [2] 11784 18426 6643 [GTCACATCCGGGATTTTGCTCTGG...CCTTTTCTTCGTTGAGAAATTTC]
   ...     ...     ...   ... ...
[366] 1851121 1856489 5369 [GAAGTGGTAACCTCTGATCCTTCA...CATCATCATGAAGTCGAACGGAT] [367] 1858686 1860020 1335 [TTCAAATGTTCGTAATACTTTTCA...ACGAATCTTGCCAACCTCATAGT]

How can I graphically represent these views on a reference genome?

Regards,
Purna

_______________________________________________
Bioc-sig-sequencing mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing

Reply via email to