On Tue, Aug 11, 2009 at 3:17 AM, Ali Mohamadian<[email protected]> wrote: > Dear All, > I have two chip-seq data sets and want to compare them. I have found > overlapped and non overlapped peaks but is > there any R package to compare the length, height or area under peaks.
IRanges has viewSums(), viewMaxs(), etc. that are relevant once you get your data into a suitable form. Take a look at the vignette of the (devel) package chipseq: http://bioconductor.org/packages/2.5/bioc/html/chipseq.html and let us know if you have questions. -Deepayan _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
