Hi All,
I wonder is there any R function to give me the frequency of A,C,G and T(and
also a,c,g,t) in my reads?
Data look like
chrY 46418 46469
cgaCGTtcCttcaggcAaagCGCtTGCcCAAatTgCcTTTTtcCCGTCCAC 0 - 46418
46469 0,0,255
chrY 119520 119570 AAGGATGGACCATCTTGTgATTGCCATATCCAgggaTCCATCCCATgatca
0 + 119520 119570 255,0,0
chrY
119740 119791 aCCCAAGGAGCtAAAGGGATCTGCGaCCCTATAGGTGGAACAACATTATGA 0 - 119740
119791 0,0,255
chrY
119740 119791 acccAAGGagctAAAGggatatgcGacccTatAgGtGGAacAacATTatga
0 - 119740 119791 0,0,255
chrY 150045 150096 ttAtTAAGAAAAAttcAGGTAAATGGAGactCGtACAGGACCTTAGAAAAA
0 - 150045 150096 0,0,255
chrY
190995 191046 ggatggacacacacacaCacacaCaCACACACACACACACACaCACACgCA
0 - 190995 191046 0,0,255
chrY
198579 198629 GTTGCTGGGAtTTGAACTCAGGACCTTTGGAaGAGCAATCGGTGCTCTTaa 0 + 198579 198629
255,0,0
chrY 237529 237579 AAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTgCTGGGaTTAAAgGcC
0 + 237529 237579 255,0,0
Thanks
Ali
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