I have some low coverage paired end data. I would like to plot the difference between the paired end reads.
I've used Shortread, IRANGES etc some but have not seen explicit use of paired end data ... I'm not quite sure how that data is handled in IRANGES as a RangedData object? Would be grateful any pointers or ideas on what others have used to analyse this data.... looking for structural varions in matched cancer/normal based on paired in read distance( data is very low coverage so I think this is all I can hope for at the moment...) Thanks Paul _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
