On Tue, Nov 17, 2009 at 9:32 PM, Dario Strbenac <[email protected]>wrote:
> Hello,
>
> Does anyone have suggestions as to why this never finishes running ?
>
>
Perhaps network issues? It seems to work here... can you download other
tracks or is it just this one?
Michael
> session <- browserSession("UCSC")
> ... ...
> q2 <- ucscTableQuery(session, "all_mrna", GenomicRanges(genome = "hg18"))
> mrna <- getTable(q2)
>
> The sessionInfo() is
> R version 2.10.0 (2009-10-26)
> x86_64-pc-linux-gnu
>
> locale:
> [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8
> [5] LC_MONETARY=C LC_MESSAGES=en_AU.UTF-8
> [7] LC_PAPER=en_AU.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] rtracklayer_1.6.0 RCurl_1.3-0 bitops_1.0-4.1
>
> loaded via a namespace (and not attached):
> [1] Biobase_2.6.0 Biostrings_2.14.5 BSgenome_1.14.1 IRanges_1.4.6
> [5] tools_2.10.0 XML_2.6-0
>
> Thanks,
> Dario.
>
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