The details from Herve:
http://bioconductor.org/packages/release/bioc/vignettes/BSgenome/
inst/doc/BSgenomeForge.pdf
On Dec 3, 2009, at 12:11 AM, Kasper Daniel Hansen wrote:
On Dec 2, 2009, at 5:31 PM, Pratap, Abhishek wrote:
2. Do I need to pack my reference genome as BSgenome data package in
order to do this ? If yes I just have the sequence and no group II
mask
file.
If you want a BSgenome package it is pretty easy to make (but it
might require some familiarity with R's package system), and it
does not require any mask files. The are additonal - sometimes
useful - information.
Kasper
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