you do not say what command you used to install. on R 2.10.0 i used
biocLite("Rolexa") on a linux system and it installed fine. The warning
messages seem irrelevant to your problem, but unless you have write access
to /usr/lib/R/library you might have some issues. the package installer
will generally create a writeable folder for installation. It may be the
case that there is no Rolexa distributed for R 2.9.0 -- i don't know, check
the site for packages suitable for 2.9.0 -- that version of R is rather out
of date now.
On Thu, Dec 3, 2009 at 3:44 AM, Purnachander <[email protected]> wrote:
> Dear All,
> I tried to install Rolexa package into my system. However, I encountered
> the following error message:
>
> Error Message :
> Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
> dependencies, :
> argument 'lib' is missing: using '/usr/lib/R/library'
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
> package Rolexa is not available
>
> Here I'm unable to figure out the error message, so can you explain what
> the error is ?
>
> sessionInfo():
> R version 2.9.0 (2009-04-17)
> i386-redhat-linux-gnu
>
> locale:
>
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] rtracklayer_1.4.1 RCurl_1.3-0 bitops_1.0-4.1
>
> loaded via a namespace (and not attached):
> [1] Biobase_2.4.1 Biostrings_2.12.8 BSgenome_1.12.5 IRanges_1.2.3
> [5] tools_2.9.0 XML_2.6-0
>
>
> Regards,
> Purnachander G
>
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