Hi Arici
yes. For discovering such sequences, look at the "cosmo" package:
http://www.bioconductor.org/packages/bioc/vignettes/cosmo/inst/doc/cosmo.pdf
For simply identifying known candidate sequences,
vMatchPattern/vcountPattern in "Biostrings" (which also offers
components with which you can build tools to try your own ideas).
Arici Pogonici scripsit 12/05/2009 11:28 PM:
Hi dear group -
please could you let me know whether there is any command in R/BioC that
would allow to identify long consensus sites (16-20 nt length) in a set of
DNA sequences.
Thanks a lot !
Arici
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Wolfgang
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Wolfgang Huber
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