hi, I'm just wondering of there is a "apply" function for the classes defined in the ShortRead package. Or is there a nice and fast way to e.g. calculate the mean Phred quality for each aligned sequence? note, I can not use the as( quality( AlignedReads ), "matrix" ), because the lengths of the alignments (i.e. aligned sequences) differs in my data set.
thanks! cheers, jo -- Johannes Rainer, PhD Bioinformatics Group, Division Molecular Pathophysiology, Biocenter, Medical University Innsbruck, Fritz-Pregl-Str 3/IV, 6020 Innsbruck, Austria and Tyrolean Cancer Research Institute Innrain 66, 6020 Innsbruck, Austria Tel.: +43 512 570485 13 Email: [email protected] [email protected] URL: http://bioinfo.i-med.ac.at [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
