Would it not make sense to return a character vector instead of a factor? As we see, factors tends to bit you, and there is no particular reason for having a factor in this particular example.
Kasper On Sun, Feb 28, 2010 at 2:03 PM, Martin Morgan <[email protected]> wrote: > Hi all -- > > I want to be a bit more explicit about a user-visible change that might > cause some confusion. This has to do with the development version of > ShortRead, and the unreleased version of Rsamtools. > > Previously, strand() returned levels c("-", "+", "*"). This changed in > BSgenome 1.15.10 svn revsion 44085 (2010-01-19). ShortRead didn't catch > up to this revision until today (version 1.5.18, revision 44930); > Rsamtools caught up in version 0.1.34. Rsamtools also made an important > change in the way reads on the reverse strand are handled, see > news(package="Rsamtools"). > > Martin > -- > Martin Morgan > Computational Biology / Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. > PO Box 19024 Seattle, WA 98109 > > Location: Arnold Building M1 B861 > Phone: (206) 667-2793 > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
