hi,
I'm using the estimate.mean.fraglen function to estimate the average
fragment length in a ChIPseq dataset.
when I use the method="correlation" setting I get however the following
error message:
> Test <- estimate.mean.fraglen( AlignedReads[[2]], method="correlation" )
Error in if (from > from0 || to < to0) stop("[from, to] smaller than support
not implemented yet (but easy to add)") :
missing value where TRUE/FALSE needed
Error in unlist(lapply(splitData, function(y) { :
error in evaluating the argument 'x' in selecting a method for function
'unlist'
is there any solution to this problem?
bests, jo
R version:
> sessionInfo()
R version 2.10.0 (2009-10-26)
x86_64-unknown-linux-gnu
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] tcltk grid stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] symp_1.5 qvalue_1.20.0 HilbertVis_1.4.0 chipseq_0.2.1
[5] RColorBrewer_1.0-2 xtable_1.5-5 ShortRead_1.4.0
lattice_0.17-26
[9] BSgenome_1.14.2 Biostrings_2.14.11 IRanges_1.4.11 Biobase_2.6.0
loaded via a namespace (and not attached):
[1] hwriter_1.1
>
--
Johannes Rainer, PhD
Bioinformatics Group,
Division Molecular Pathophysiology,
Biocenter, Medical University Innsbruck,
Fritz-Pregl-Str 3/IV, 6020 Innsbruck, Austria
and
Tyrolean Cancer Research Institute
Innrain 66, 6020 Innsbruck, Austria
Tel.: +43 512 570485 13
Email: [email protected]
[email protected]
URL: http://bioinfo.i-med.ac.at
[[alternative HTML version deleted]]
_______________________________________________
Bioc-sig-sequencing mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
