Hi Aaron,
On 3/8/10 1:30 AM, Aaron Statham wrote:
For the last few days I've been coming across a show-stopping bug when
performing sequence analysis using BSgenome - my code fails either in
getSeq, matchPattern or findOverlaps in a completely intermittent way,
with the only consistent error message being inside either a get() or
assign() call:
"formal argument "envir" matched by multiple actual arguments"
Thanks for reporting this and providing a reproducible case. I can get
the same error using your script and hope to be able to track down the
root cause and provide a fix.
Any suggestions/workarounds? Or would this be better posted to the
R-devel list?
Give us a couple days to track this down. Not sure what to suggest for
workarounds other than adding some error checking and try repeating the
computation when it fails.
+ seth
--
Seth Falcon
Bioconductor Core Team | FHCRC
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