Hi Martin,
Using the ShortRead package, for files > 6.5 Gb size, I seem to be
running into this error using the readFastq function:
Error in .Call(.read_solexa_fastq, src, withIds) :
negative length vectors are not allowed
If this is memory related - is there a work-around to working with the
entire file?
Thank You,
Sirisha
> sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-unknown-linux-gnu
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ShortRead_1.4.0 lattice_0.17-26 BSgenome_1.14.2
Biostrings_2.14.12
[5] IRanges_1.4.11
loaded via a namespace (and not attached):
[1] Biobase_2.6.1 grid_2.10.1 hwriter_1.1
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