Hi, I would like to know if there is software to put PE reads together? In this case there is no reference sequence for alignment. The PE reads would sometimes overlap or be close together by ~10-20bp. There are matching titles for the paired reads. There is a subset of reads from one of the reads which covers approximately the same region. So this subset of reads could be overlapped with the 2nd set of reads. Is this possible?
Lana Schaffer Biostatistics/Informatics The Scripps Research Institute DNA Array Core Facility La Jolla, CA 92037 (858) 784-2263 (858) 784-2994 [email protected] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
