On 04/12/2010 07:15 PM, joseph wrote: > Hello > I have a ShortReadQ object (rfq) and a ShortRead object (rf) where sread(rf) > is a subset of sread(rfq) > How can I filter the ShortReadQ object (rfq) based on sread(rf)? >
Hi Joseph -- if id(rfq) and id(rf) are both present (and BStringSets) then you could rfq[unlist(vwhichPDict(id(rf), id(rfq)))] if the id's are not present you could try the same approach with the sread()'s, but there's no guarantee that they would be unique. Hope that helps, Martin > rfq[sread(rf)] > Error in .nextMethod(x = x, i = i, ...) : invalid subscript type > thanks for the help > Joseph > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
