On 04/13/2010 03:26 PM, margherita mutarelli wrote:
Thank you very much,
your example was very clear and dissipated my doubts!
This also means that when creating a bed file to be visualized in the UCSC
browser from an IRanges object, the start column should be converted again
to 0-index, by subtracting 1 to the start of the coordinates, to visualize
it correctly, shouldn't it?
yes
Hans
Cheers,
Margherita
2010/4/13 Hans-Rudolf Hotz<[email protected]>
this topic always causes problems. As far as I understand the situation,
you have to add 1 to the start of the coordinates you have downloaded (I
assume a BED files) from UCSC.
Let me try and explain with a simple example:
[...]
play with the 'upload custom track' (using the small BED file from above)
tool on the UCSC genome browser in case this is stil confusing
Hans
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