Kasper- Many thanks for the quick help. The problem was on my end (unsurprisingly)--after running debug, I realized that my script was loading the chrMap object incorrectly. I had saved the vector for easy use, but was loading it:
chrMap<-load(file="chrMap.Robj") rather than load(file="chrMap.Robj") Everything else seems to work--sorry for the confusion. Joe _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
