Thanks for reporting Jose, We will look into this issue and will fix the files available on our wiki.
------------------------------------------------------------------ Raphael Gottardo, PhD Research Unit Director in Computational Biology Clinical Research Institute of Montreal (IRCM) 110, avenue des Pins Ouest Montréal (Québec) H2W 1R7 url: http://www.rglab.org<http://www.rglab.org/> phone: 514-987-5747 fax: 514-987-5546 email: [email protected]<mailto:[email protected]> On Jun 11, 2010, at 8:09 AM, Muino, Jose wrote: Hi Raphael, Indeed, the problem was that the GSL library was not installed on my computer. I was following the instruction from your wiki, but it didn't work for me. When I install the Windows binary (32 bits), the files on the bin folder are: gsl-histogram.exe gsl-randist.exe libgsl-0.dll libgslcblas-0.dll But there is no libgsl.dll file. And PICS gives an error since doesn't find this file. But using http://gnuwin32.sourceforge.net/packages/gsl.htm, the files on the bin folder are: gsl-histogram.exe gsl-randist.exe libgsl.dll libgslcblas.dll And then PICS seems to work without any problem. Kind regards, Jose Dr. Jose M Muino Plant Research International B.V. Droevendaalsesteeg 1 P.O. Box 16, 6700 AA Wageningen, The Netherlands Phone: +0317-481122. E-mail: [email protected]<mailto:[email protected]> http://www.pri.wur.nl -----Original Message----- From: Gottardo Raphaël [mailto:[email protected]] Sent: woensdag 9 juni 2010 16:37 To: Muino, Jose Cc: [email protected]<mailto:[email protected]> Subject: Re: [Bioc-sig-seq] Problem loading PICS in Windows Did you follow the documentation and installed GSL? It's explained in the vignette. You might also want to look at: http://wiki.rglab.org/index.php?title=Public:The_GSL_library_and_R We provide binary versions that you can download from the page above. I will add a sentence in the description file, it's there for our other packages but not PICS. Please let me know if you are still having problems. Raphael On Jun 9, 2010, at 10:30 AM, Muino, Jose wrote: Hi, I have a little problem loading PICS. After installing the package without any error or warning message, I tried to load the package with the next error: library(PICS) Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library 'C:/PROGRA~1/R/R-211~1.1/library/PICS/libs/PICS.dll': LoadLibrary failure: The specified module could not be found. Error: package/namespace load failed for 'PICS' I also get a window error saying: "RGui: Rgui.exe - Unable to locate Component This application has failed to start because libgsl.dll was not found" Do you know how to solve the problem? Thanks, Jose sessionInfo() R version 2.11.1 (2010-05-31) i386-pc-mingw32 locale: [1] LC_COLLATE=Dutch_Netherlands.1252 LC_CTYPE=Dutch_Netherlands.1252 [3] LC_MONETARY=Dutch_Netherlands.1252 LC_NUMERIC=C [5] LC_TIME=Dutch_Netherlands.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] chipseq_0.4.0 ShortRead_1.6.2 Rsamtools_1.0.2 [4] lattice_0.18-8 BSgenome_1.16.2 Biostrings_2.16.5 [7] GenomicRanges_1.0.3 IRanges_1.6.6 loaded via a namespace (and not attached): [1] Biobase_2.8.0 grid_2.11.1 hwriter_1.2 Dr. Jose M Muino Plant Research International B.V. Droevendaalsesteeg 1 P.O. Box 16, 6700 AA Wageningen, The Netherlands Phone: +0317-481122. E-mail: [email protected]<mailto:[email protected]> http://www.pri.wur.nl _______________________________________________ Bioc-sig-sequencing mailing list [email protected]<mailto:[email protected]> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing ------------------------------------------------------------------ Raphael Gottardo, PhD Research Unit Director in Computational Biology Clinical Research Institute of Montreal (IRCM) 110, avenue des Pins Ouest Montréal (Québec) H2W 1R7 url: http://www.rglab.org<http://www.rglab.org/> phone: 514-987-5747 fax: 514-987-5546 email: [email protected]<mailto:[email protected]> _______________________________________________ Bioc-sig-sequencing mailing list [email protected]<mailto:[email protected]> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
