I think I fixed this one, version 1.1.13. Michael
On Sat, Jun 12, 2010 at 12:34 AM, Dario Strbenac <[email protected]>wrote: > Hello, > > I have both the query and subject seqnames in the same naming format, yet I > still get an error. Could this be a bug ? I have GenomicRanges_1.0.3 loaded. > > > crossMatch <- findOverlaps(gr, genoFeatures) > Error in .local(query, subject, maxgap, minoverlap, type, select, ...) : > 'query' and 'subject' do not use a similiar naming convention for seqnames > > table(seqnames(gr)) > > chr10 > 135374737 > > table(seqnames(genoFeatures)) > > chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 > chr20 > 67731 30782 39027 39401 11943 20718 24489 28618 40905 10309 40218 52690 > 17253 > chr21 chr22 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chrX chrY > 8740 15644 40959 26560 30281 33647 34001 24731 27650 32215 3878 > > I ran through gr having coordinates from chr1 to chr9 fine, it's just when > gr got to containing coordinates from chr10, that it crashes. > > -------------------------------------- > Dario Strbenac > Research Assistant > Cancer Epigenetics > Garvan Institute of Medical Research > Darlinghurst NSW 2010 > Australia > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
