Hi, This must be readily doable and I am just missing the obvious -- I am trying, for a long sequence, to classify each position as coming from a particular context. Something like running nucleotide table. The things that I have thought about doing are:
.) Making Views representing my sliding windows, but then I don't see an obvious thing except nucleotide frequency, but that doesn't really solve the problem. .) Using nucleotideFrequencyAt, however, I am not sure that this function does what I want. Since it takes an XStringSet type object rather than a DNAString type object. thanks, jim _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
