Hi, On Tue, Jul 6, 2010 at 8:56 PM, Lana Schaffer <[email protected]> wrote:
> Hi, > We have directional inserts to sequence (Illumina platform) and want to align > to either the sense or antisense strand of DNA one at a time. Is there > alignment software to do this? I know that bowtie can do this (I'm guessing BWA can as well). Look for the description of the --nofw and --norc arguments here: http://bowtie-bio.sourceforge.net/manual.shtml -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
