Hi I using R-2.11 (with shared libs) and trying to installl Rsamtools (
2.6.26.8-57.fc8 x86_64).
I am using the R CMD method to get this to work.
R CMD INSTALL Rsamtools_1.0.7.tar.gz
...
** installing help indices
converting help for package ‘Rsamtools’
finding HTML links ... done
BamViews-class html
finding level-2 HTML links ... done
Rsamtools-package html
ScanBamParam-class html
readBamGappedAlignments html
Rd warning: ./man/readBamGappedAlignments.Rd:10: missing file link
‘GappedAlignments’
Rd warning: ./man/readBamGappedAlignments.Rd:36: missing file link
‘GappedAlignments’
readPileup html
Rd warning: ./man/readPileup.Rd:34: missing file link ‘GRanges’
scanBam html
** building package indices ...
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/usr/local/lib64/R/library/Rsamtools/libs/Rsamtools.so':
/usr/local/lib64/R/library/Rsamtools/libs/Rsamtools.so: undefined symbol:
ecrc32
ERROR: loading failed
* removing ‘/usr/local/lib64/R/library/Rsamtools’
libz.so.1 is present in /usr/lib64
I am not sure what library contains ecrc32
Davdi
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