On Thu, Sep 2, 2010 at 11:14 AM, Ivan Gregoretti <[email protected]> wrote:
> Hello Bioc team, > > Would it be possible to improve the efficiency of import()? > > 1) perhaps reading data by chunks. > > 2) perhaps reading in only selected fields such as strand or score. > > Both of these are good ideas and are on the TODO list. The second one would be simpler than the first. I could see implementing the chunked reading by having the user pass a block size and a callback. Michael The latest improvement allowing direct import()ing into a GRanges > object is excellent. No suprisingly, I am back for more! > > Thank you, > > Ivan > > Ivan Gregoretti, PhD > National Institute of Diabetes and Digestive and Kidney Diseases > National Institutes of Health > 5 Memorial Dr, Building 5, Room 205. > Bethesda, MD 20892. USA. > Phone: 1-301-496-1016 and 1-301-496-1592 > Fax: 1-301-496-9878 > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
