Hi Dario --
Quoting Dario Strbenac <[email protected]>:
Hello,
I'm trying to create a longer list out of two GRangesList objects
and am getting an unusual error. I think it should work out OK from
the information in the package reference manual.
summary(grl)
Length Class Mode
3 GRangesList S4
summary(grl2)
Length Class Mode
3 GRangesList S4
g <- append(grl, grl2)
Error in `rownames<-`(`*tmp*`, value = c("gr1", "gr2", "gr3", "gr1",
"gr2", :
invalid rownames length
g <- c(grl, grl2)
Error in `rownames<-`(`*tmp*`, value = c("gr1", "gr2", "gr3", "gr1",
"gr2", :
invalid rownames length
I'm using GenomicRanges 1.09 and R 2.11.1.
This should be fixed in IRanges 1.6.17. Try updating your IRanges,
e.g., in a new R session
source('http://bioconductor.org/biocLite.R')
biocLite('IRanges')
you should end up with
sessionInfo()
R version 2.11.1 Patched (2010-08-30 r52862)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] GenomicRanges_1.0.9 IRanges_1.6.17
Martin
--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
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