Hi, I wonder if you guys could help me out understanding what the problem may be when reading in some BAM files I have...
When viewing them with samtools, I get reads on chr6 (samtools view file.bam chr6) When using scanBam/scanBamHeader, I do not get any reads on chr6 (latest RSamtools on 2.11.1, but same happens with the latest devel too). Suggestions on how to proceed in order to understand what may be going on (or what I may be missing)? My guess is that the files are corrupted, nothing strange comes up when using samtools... Thank you, benilton _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
