We are liking the idioms that go with GenomicRanges and RangedData Objects (follow, precede, findOverlaps, etc), but we are bumping up against memory demands of loading very large objects.

Is there now or will there soon be a cached version of these that will lessen our memory requirements?

If not, is there a cookbook as to how to create and save cached versions of these objects.

Or maybe a place to look in the bioConductor codebase to get some ideas of how to go about constructing cached versions of these classes?

Thanks,

Chuck


Charles C. Berry                            (858) 534-2098
                                            Dept of Family/Preventive Medicine
E mailto:[email protected]               UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901

_______________________________________________
Bioc-sig-sequencing mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing

Reply via email to