That coercion only works if the elements of your GenomeData are coercible to RangedData (which after coercion are combined into a single RangedData). So it would be good to know what's in your GenomeData. If each element is a list, as your error message suggests, it won't work, as there really is no way to convert a list to a RangedData.
Michael On Mon, Oct 18, 2010 at 7:00 PM, Dario Strbenac <[email protected]>wrote: > Hello, > > This conversion used to work before but it seems like it doesn't any > longer. > > > summary(rs) > Length Class Mode > 25 GenomeData S4 > > as(rs, "RangedData") > Error in FUN(X[[1L]], ...) : > no method or default for coercing "list" to "RangedData" > > sessionInfo() > R version 2.12.0 (2010-10-15) > Platform: x86_64-pc-mingw32/x64 (64-bit) > > locale: > [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 > LC_MONETARY=English_Australia.1252 LC_NUMERIC=C > [5] LC_TIME=English_Australia.1252 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] BSgenome_1.18.0 Biostrings_2.18.0 GenomicRanges_1.2.0 > IRanges_1.8.0 > > loaded via a namespace (and not attached): > [1] Biobase_2.8.0 > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
