On 12/08/2010 03:03 PM, Hervé Pagès wrote:
[...]
Also, how would we generate the two output files:
name_low_complexity_removed.fastq and low_complexity_reads.fastq?
You could try to use write.XStringSet(... , format="fastq") for this.
Or use the IO facilities of the ShortRead package. It depends what you
want to do with the scores.
^^^^^^
I meant "with the qualities". The FASTQ format stores the qualities of
the reads too.
H.
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