Please try 1.10.6, when it comes out. Thanks, Michael
On Wed, Dec 8, 2010 at 2:00 PM, Meier, Samuel <[email protected]> wrote: > Hello, > > I am trying to use the liftOver function from the rtracklayer package, but > I receive the following error message when attempting to import the chain > file downloaded from UCSC. > > > import.chain("dm3ToDp3.over.chain") > Error in getClass("Alignment") : "Alignment" is not a defined class > > > sessionInfo() > R version 2.12.0 (2010-10-15) > Platform: x86_64-unknown-linux-gnu (64-bit) > > locale: > [1] C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] rtracklayer_1.10.3 > [2] RCurl_1.4-3 > [3] bitops_1.0-4.1 > [4] BSgenome.Dyakuba.UCSC.droYak2_1.0.0 > [5] BSgenome.Dsimulans.UCSC.droSim1_1.0.0 > [6] BSgenome.Dpseudoobscura.UCSC.dp3_1.0.0 > [7] BSgenome.Derecta.UCSC.droEre1_1.0.0 > [8] BSgenome.Dananassae.UCSC.droAna2_1.0.0 > [9] BSgenome.Dmelanogaster.UCSC.dm3_1.3.16 > [10] BSgenome_1.18.0 > [11] Biostrings_2.18.0 > [12] GenomicRanges_1.2.1 > [13] IRanges_1.8.2 > > loaded via a namespace (and not attached): > [1] Biobase_2.10.0 XML_3.2-0 tools_2.12.0 > > Thanks, > Sam Meier > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
