On 12/11/2010 06:12 PM, Neel Aluru wrote: > Dear Bioc Users, > > I just have quick question about the SOLiD sequencing analysis. Does > Bioconductor has any packages that can handle SOLiD color space data. > I want to do some preliminary analysis such as converting them to > fastq sanger format and fasta format of unique reads. Right now I am > using some perl scripts that come with aligners (BWA/bowtie). I went > through BioC mailing lists and some associated papers and they have > mentioned that in future they will extend their usage to SOLiD. If > you know about them, could you please share it! > > Thank you very much in advance.
Hi Neel -- I don't think there are any Bioc packages handling color space; it would seem like one would want to carry color space through alignment / variant calling / ..., rather than converting to fastq? Martin > > Sincerely, Neel > > Neel Aluru Postdoctoral Scholar Biology Department Woods Hole > Oceanographic Institution Woods Hole, MA 02543 USA 508-289-3607 > > _______________________________________________ Bioc-sig-sequencing > mailing list [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
