Hello fellow bioconductorians One common question that arises after a successful ChIP-seq peak detection is "What is the binding motif"?
The package cosmo was created to answer that question. The documentation shows a very nice example to get you started when you know what your binding site should look like. This is my question to cosmo experts --How do you start when you have no a priori knowledge, not even the length of the motif? I expect to go through several iterations but the question still stands: all I know is that this mysterious transcription factor binds to DNA rather than Martian rocks. Thank you, Ivan Ivan Gregoretti, PhD National Institute of Diabetes and Digestive and Kidney Diseases National Institutes of Health 5 Memorial Dr, Building 5, Room 205. Bethesda, MD 20892. USA. Phone: 1-301-496-1016 and 1-301-496-1592 Fax: 1-301-496-9878 _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
