Hi Guys,
I have Bowtied (aligned) sequences against a local database having few
sequences
of length between 70-300bp. Now lets take SeqA of length 120bp from my target
database. Since the RNA-Seq reads are of length 38bp i guess, how do i
ascertain
that for instance 3 different reads aligned perfectly to cover the SeqA.
many thanks in advance,
Chu
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