Hi Hans-Ulrich, thanks for your prompt answer. Any chance you could give an approximate timeshift for this upgrade? I am very interested in that, I wonder if you could keep me posted. I will also keep an eye on the package webpage for any updates.
Best, Dave > Date: Wed, 16 Feb 2011 18:02:18 +0100 > From: [email protected] > To: [email protected] > Subject: Re: [Bioc-sig-seq] R453Plus1Toolbox > > Hi Dave, > > that is right. The manual of Roche's AVA software says: "The automatic > Variant detection does not currently report insertions or monomer > deletions shorter than 3 bases." At this time, the R453Plus1Toolbox does > not implement an indel calling algorithm but relies on the results > reported by the AVA software. > Since it seems that Roche is not going to solve this issue, we have this > topic on our to-do list for our package. > > Best, > Hans-Ulrich > > > On 16/02/11 13:43, David A. wrote: > > Hi, I have found a package called R453Plus1Toolbox for analysis of Roche's > > sequencing data. As far as I know, using AVA, 1bp indels are filtered off > > fro mthe results to avoid false positives. They can be seen by going to the > > flowgrams of the region, but they are not part of the output table. Does > > anyone know if R453Plus1Toolbox can detect them? > > > > Thanks, > > > > Dave > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-sig-sequencing mailing list > > [email protected] > > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > > > > > -- > Hans-Ulrich Klein > Institute of Medical Informatics > University of Münster > Domagkstraße 9 > 48149 Münster, Germany > Tel.: +49 (0)251 83-58405 > > _______________________________________________ > Bioc-sig-sequencing mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing [[alternative HTML version deleted]]
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