Hello
I would like to install EdgeR on a Linux Debian system with a rather old
version of R (2.7.1)
The preselected selection of Core Bioconductor has been installed today
with biocLite().
I have first tried as explained at
http://www.bioconductor.org/help/bioc-views/release/bioc/html/edgeR.html
> source("http://bioconductor.org/biocLite.R";)
> biocLite("edgeR")
Running biocinstall version 2.2.11 with R version 2.7.1
Your version of R requires version 2.2 of BioConductor.
Avis dans install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, :
argument 'lib' is missing: using '/usr/local/lib/R/site-library'
Warning message:
In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, :
package ‘edgeR’ is not available
Then I have downloaded edgeR_2.0.4.tar.gz and tried to install the
package from the archive :
install.packages(".../R/packages/edgeR_2.0.4.tar.gz", dependencies =
TRUE, repos = NULL)
Avis dans install.packages(".../R/packages/edgeR_2.0.4.tar.gz", :
l'argument 'lib' manque : '/usr/local/lib/R/site-library' est utilisé
* Installing *source* package 'edgeR' ...
** R
** data
** inst
** preparing package for lazy loading
Error in .walkClassGraph(classDef, "subclasses", where) :
the "subClass" list for class "LargeDataObject", includes an undefined
class "RGList"
Error: unable to load R code in package 'edgeR'
Execution halted
Could someone give me any advices to help me in this installation ?
Thanks in advance
Jean-Paul Bouchet
Institut National de la Recherche Agronomique - Centre de Provence,
Alpes, Côte d'Azur
UR 1052 <http://w3.avignon.inra.fr/gafl/en> - Génétique et Amélioration
des Fruits et Légumes
Domaine Saint-Maurice - BP 94 - F-84143 Montfavet cedex - France
E-mail : <mailto:[email protected]>
Phone : +33-(0)4-3272-2723 - Fax : +33-(0)4-3272-2702
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