On 11-07-26 09:53 AM, Kasper Daniel Hansen wrote:
On Tue, Jul 26, 2011 at 11:35 AM, Martin Morgan<mtmor...@fhcrc.org> wrote:
On 07/26/2011 07:14 AM, Ivan Gregoretti wrote:
Great. The subversion compiles without problems.
For those who usually don't install from SVN, this is how it's done:
1)
Become root
Not usually necessary. Just cd to some location on your file system, svn co
... and then R CMD INSTALL rtracklayer. You might sudo R CMD INSTALL
rtracklayer if you were updating a system-wide installation (but then you
probably wouldn't want to be installing from svn).
To be even more precise, you are supposed to do
R CMD build rtracklayer
Or, in this particular case, since the vignette won't build:
R CMD build --no-vignettes rtracklayer
Cheers,
H.
R CMD INSTALL rtracklayer_$VERSION.tar.gz
Kasper
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Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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