Hi all,
as part of my master's thesis I developed a prototype which extends ADP
with multiple context-free grammars to easily model pseudoknots and the
RNA-RNA interaction problem. It is based on the original Haskell-ADP and
thus is quite slow, but still nice for experimenting.
There are slides from the Herbstseminar Bioinformatik (Doubice) which
introduce and motivate it:
http://adp-multi.ruhoh.com/assets/media/talk_herbstseminar2012.pdf
Further info can be found at http://adp-multi.ruhoh.com
Cheers
Maik
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