Hi Ketil, args I forgot ;-) thx for reminding me. Looks good. Can you update my URL to: http://www.bioinf.uni-leipzig.de/~choener/haskell/
... Leipzig clusters Haskell users ;-)
Gruss,
Christian
* Ketil Malde <ke...@malde.org> [31.10.2014 14:05]:
>
> That time of year again...
>
> I did a quick writeup, basically keeping the intro section from before,
> and adding some notes about Sarah's GSoC work, and Florian's two new
> libraries. Anything else that needs to go in? (I don't want to go into
> too much detail, just a brief overview showing there's some activity
> going on. So brief notes/links please.)
>
> % Biohaskell-KB.tex
> \begin{hcarentry}[updated]{Biohaskell}
> \label{bioinformatics}
> \report{Ketil Malde}%11/13
> \participants{Christian H\"oner zu Siederdissen, Michal J.\ Gajda, Nick
> Ignolia, Felipe Almeida Lessa, Dan Fornika, Maik Riechert, Ashish Agarwal,
> Grant Rotskoff, Florian Eggenhofer, Sarah Berkemer}
> \makeheader
>
> %**<img width=200 src="./biohaskell.svg">
> %*ignore
> \begin{center}
> \includegraphics[width=0.235\textwidth]{html/biohaskell.pdf}
> \end{center}
> %*endignore
>
> Bioinformatics in Haskell is a steadily growing field, and the
> \href{http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics}{\emph{Bio}
> section} on Hackage now contains 69 libraries and applications. The
> \href{http://biohaskell.org}{biohaskell web site} coordinates this
> effort, and provides documentation and related information.
> Anybody interested in the combination of Haskell and bioinformatics is
> encouraged
> to sign up to the mailing list (currently by emailing
> \email{ketil@@malde.org}{Ketil}), and to register and document their
> contributions on the
> \href{http://biohaskell.org}{http://biohaskell.org} wiki.
>
> In the summer of 2014, Sarah Berkemer was financed by Google's
> \href{https://www.google-melange.com/gsoc/homepage/google/gsoc2014}{Summer of
> Code} program to work on optimizing
> \href{http://blog.malde.org/posts/transitive-alignments.html}{transalign}.
> After
> a summer's work, Sarah was able to improve both \href{space and time
> usage}{http://biohaskell.org/GSoC_blog}.
> Other new additions are parsers by Floran Eggenhofer for the NCBI
> \href{Genbank}{https://hackage.haskell.org/package/Genbank} format and for
> \href{Clustal}{https://hackage.haskell.org/package/ClustalParser}
> mulitiple sequence alignments.
>
> \FurtherReading
> \begin{compactitem}
> \item \url{http://biohaskell.org}
> \item \url{http://blog.malde.org}
> \item \url{http://www.tbi.univie.ac.at/~choener/haskell/}
> \item \url{http://adp-multi.ruhoh.com}
> \item \url{https://bioinf.eva.mpg.de/biohazard/}
> \end{compactitem}
> \end{hcarentry}
>
> -k
> --
> If I haven't seen further, it is by standing in the footprints of giants
pgpH3jbdEMXqx.pgp
Description: PGP signature
