Could You provide some larger test cases that You mention? On Sunday, July 26, 2015, Youens-Clark, Charles Kenneth - (kyclark) < kycl...@email.arizona.edu> wrote:
> I have an idea to unique and combine the k-mers of many (extremely large) > FASTA files for a project. I have a proof of concept working in Perl that > works fairly quickly because of the ability to cache the open file handles > (at most 1024 [4^5 as I'm using 5-mers as the bins]). > > I can get a Haskell version to work, but extremely slowly as I have no > idea how to work around having to open and close a file for every single > k-mer. > > Any suggestions? All code and docs here: > > https://github.com/kyclark/kmer-binner > > Ken -- Pozdrawiam Michał
