Hi Ketil, I never wrote a single line in Haskell and am not familiar with the repository, etc. I hope somebody else steps in. Good luck, Martin
Ketil Malde wrote: > > Hi, > > Thanks for the heads up. I do neither much bioinformatics nor Haskell > these days. Feel free to fix this and upload a new version to Hackage > (or elsewhere). > > Cc to the biohaskell list, in case somebody wants to take > responsibility... > > -k > > On 2019-02-05 16:45 (+0100), Martin Mokrejs <mmokr...@fold.natur.cuni.cz> > wrote: > >> Hi Ketil, >> maybe you already fixed this but seems ghc-8.6.3 is quite picky now: >> >> >> [29 of 46] Compiling Bio.GFF3.FeatureHier ( Bio/GFF3/FeatureHier.hs, >> dist/build/Bio/GFF3/FeatureHier.o ) >> >> Bio/GFF3/FeatureHier.hs:54:40: error: >> * Data.Map.insertWith' is gone. Use Data.Map.Strict.insertWith. >> * In the expression: M.insertWith' (++) pid [k] m0 >> In an equation for `insertParentToKey': >> insertParentToKey k m0 pid = M.insertWith' (++) pid [k] m0 >> In an equation for `featureEdges': >> featureEdges feats >> = map featureEdge $ keyedFeats >> where >> keyedFeats = zip feats [1 .. ] >> idToChildKeys = foldl' insertParentsToKey M.empty keyedFeats >> insertParentsToKey m0 (f, k) >> = foldl' (insertParentToKey k) m0 $ parentIds f >> insertParentToKey k m0 pid = M.insertWith' (++) pid [k] m0 >> .... >> | >> 54 | insertParentToKey k m0 pid = M.insertWith' (++) pid [k] m0 >> | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ >> >> Bio/GFF3/FeatureHier.hs:69:53: error: >> * Data.Map.insertWith' is gone. Use Data.Map.Strict.insertWith. >> * In the second argument of `($)', namely >> `M.insertWith' (++) pid [f] m0' >> In the expression: return $ M.insertWith' (++) pid [f] m0 >> In the expression: >> if M.member pid $ idToFeature hier0 then >> return $ M.insertWith' (++) pid [f] m0 >> else >> throwError >> $ strMsg >> $ "insertFeature: Parent ID " ++ show pid ++ " not present" >> | >> 69 | then return $ M.insertWith' (++) >> pid [f] m0 >> | >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ >> >> >> >> Cheers, >> Martin > _______________________________________________ Biohaskell mailing list Biohaskell@biohaskell.org http://biohaskell.org/cgi-bin/mailman/listinfo/biohaskell
